Results for "CA"
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statistical analysis and visulization of functional profiles for genes and gene clustersB...n Y and He Q (2012). “clusterProfiler: an R package for comparing biological themes among gene clusters.&...2930 days ago
- ...od for rapid, automated identification and ranking of phylogenetically atypical proteins on a gen...es, then using these matches to calculate a lineage probability...are useful not only for large-scalede novo predictions of...ul feature of the DarkHorse HGT Candidate database is the opport...
2924 days ago
- ...ng the transferred sequence from ancestral (vertically derived) genes in its reci...nucleotide composition is normally nearly identical. Nevertheless, there is a gr...tive genomic environment and used it to identify candidate HGT events between clo...
2924 days ago
Linux command line exercises for NGS data processing
...d gives them to the operating system. Most Linux systems utilize Bourne Again SHell (bash), but there are several additional shell programs on a typical Linux system such as ksh, tc...2924 days ago
- ...sequencing errors. It does not generate INDEL sequencing errors, but this can be partly compensated by sim...l as the number of polymorphisms and sequencing errors in read names. One can evaluate the accuracy of a m...
2923 days ago
- ...a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is impleme...forms. Currently CSBB provides 13 modules focused on analytical tasks like performing upper-...
2917 days ago
- ...nhancers) at distal genomic locations can interact with each o...ions, e.g., ChIA-PET and HiC, can generate genome-wide maps of...litate prioritization of critical loci for important cellular...we developed a web-based application, QuIN, which enables: 1)...
2919 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...aster abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-mers, Kraken achieves classification accuracy comparable to th...2919 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughpu...mismatches in the protein alignment. The search can process up to millions of re...atabase comprising 4821 microbial genomes. Kaiju can also be used for querying an...
2919 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S...g, and downloading. The data and tools presented by greengenes can assist the researcher in choosing phylogenetically specific probes, interpret...
2917 days ago
