Results for "DU"
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...can be used by genomic alignment programs (such as MAVID) to do a detailed alignment of each orthologous segment. https://www.biostat.wisc.edu/~cdewey/mercator/...2672 days ago
FSA: Fast Statistical Alignment
...h as aligning thousands of sequences or megabase-long sequences. FSA introduces several novel methods for...uery-specific learning" alignment method makes FSA very robust: it can produce superior alignments of sets...2672 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and...
2662 days ago
- ...ence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects are disp...
2661 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...gions of genomes between two organisms. Alternatively, by examining colinear sets of homologous genes found within a single genome, segmental genome duplications can be revealed. T...2661 days ago
- ...ob in two steps, at the block level and then at the nucleotide level. The former "coarse-grained" alignment can explore genomic rearrangements and reduce the regions to be analyzed...
2656 days ago
- ...sed genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a re...ntersect two interval files), quite sophisticated analyses can be conducted by combining multiple bed...
2654 days ago
- ...ning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to training modules (webinars and PowerPoint p...
2654 days ago
- ...Biotechnology Information (NCBI) databases. It can post-process downloaded files, including archive extraction and file conversions. http://dunbrack.fccc.edu/BioDownloader/
2653 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...cing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes.&nbs...2651 days ago
