Results for "Genome Interpretation"
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Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set...the best k-mer size, minimum abundance of correct k-mers, and genome size es...2757 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed repre...
2757 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTe...rl Optional: BLAT or BLAST (to generate alignments against a reference genome). If us...2756 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-...a single integrated solution in an easily accessible format. https://genomebiology....
2754 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural vari...ortunately, the mapping and alignment of mate pair read pairs to a reference genome is a ch...2750 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembl...2750 days ago
- ...ed by the growing number of full genome sequences available in public...ailable to visualize and compare genomes and to infer evolutionary ev...and compare unlimited numbers of genomes in a broad phylogenetic view...n, thus greatly facilitating the interpretation of the data. Availability:&n...
2748 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 20...2746 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses information from assemblies m...
2746 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality dat...
2745 days ago
