Results for "Genome Sequence"
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GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "b...n attempt to produce a realistic assessment of genome assembly software in a rapidl...of GAGE have now been published in the journal Genome R...2851 days ago
CGView - Circular Genome Viewer
...isplay and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications...as a visualization tool in a sequence annotation pipeline. Users can interact with the genome using a powerful pan-and-zoom...2839 days ago
BLAST Ring Image Generator (BRIG)
...ons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...y between a central reference sequence and other sequences as concentric rings. BRIG w...egions present in unassembled sequence data from multiple samples to...2828 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, se...
2828 days ago
- ...ogram that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minut...fficient. (Even a single node with 16GB of ram can handle over 1Gbp of sequence) unlimited by pattern length...
2828 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for ne...ple haploid or diploid pairs of incompatible loci can be spread throughout the genome a...2827 days ago
- ...rmore, multiple rearrangements in a single area of the genome can make cataloguing and inte...breakpoint is defined as a region or point where the sample sequence has altered from the reference sequence. Minimum interpretation is ma...
2827 days ago
- Development of cancer is driven by somatic alterations, including numerical and structu...berrations (CNAs) of chromosomal segments in tumor genomes. However, there is lack of c...location of chromosomal CNA-associated breaks by a genome-w...
2208 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of...lexa-reads, map them flexibly to several reference genomes using one of four different...ut is furthermore compatible with software such as genome b...
2824 days ago
- ...challenges in analyzing a metagenome is phylogenetic classification of raw sequence reads into groups represent...is a useful prerequisite for genome assembly and for analysis of th...to taxonomically classify DNA sequences, can accurately classify rea...
2818 days ago
