Results for "IG"
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...informatics department at The Institute for Genomic Research (TIGR) and development continues at the J. Craig Venter Institute (JCVI) and t...parative genome analysis. The following sections provide some high-level technical details abou...2856 days ago
OPERA : Optimal Paired-End Read Assembler
...g reads to order and orient the intermediate contigs/scaffolds assembled in a gen...ils see Gao et al, 2011). Note that since the original publication, we have made...st version: OPERA-LG. In our benchmarks, it has significantly improved corrected...2854 days ago
- ...Its ultimate goal is to find a minimal set ofunitigs to represent all the informa....Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-index&nb...his is not a favorable solution.Fermi is designed to be used on a multi-core...
2854 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publicatio...y in how the genome map is rendered. To aid with easily configuring the display of a genome,...2844 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/U...e at: http://sourceforge.net/projects/brig If you have any questions or..., post them on one of the trackers on BRIG’s SourceForge page: htt...ng automatically via a simple GUI. Contig boundaries and read coverage...2833 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42...
2833 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...rix describing the movement of individuals among sub-populations can be replaced by a connectivity matrix and a reduced dispersal matrix describing migration only among the connecte...2831 days ago
- ...sify reads as short as 100 bp. Its accuracy for short reads represents a significant leap forward over pre...on which combines analysis from both Phymm and BLAST, produces even higher accuracy.
2823 days ago
- ...ead-to-reference or genome-genome alignments is lost for structural...ured by long reads or assembled contigs often need more context to u...This way Ribbon shows patterns in alignments of many reads across mu...rom chr19 and inserted into chr16 (Figure 1b). Thus, Ribbon enables...
2812 days ago
- ...production of large datasets. Visualizing such big data has posed technical chal...mming acumen. Since heatmaps are used to depict high-dimensional numerical data a...frequently been barriers-to-entry for creating highly customizable heatmaps. Res...
2812 days ago
