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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools...ference genome Manipulating SAM/BAM alignment files Visualizing data in a...2983 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps s...set of reads, however it can return one "best" map location if the relevant parameter is invoked. More a...2983 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...cBio RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical a...ssemble trimmed corrected sequences Read the documentation New release https://git...2966 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual system to detect t...2983 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on&n...FCM (Markov model), of high context order (typically 20). For...ing at a glance a map of the entire genomes.2983 days ago