Results for "New Genome"
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Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a da...-mer size, minimum abundance of correct k-mers, and genome size estimation for your data...2757 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed represent...
2757 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave)...Perl Optional: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, add faToTwoB...2756 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EA...of-the-art tools for each step as well as new complementary tools tailored for...in an easily accessible format. https://genomebiology.biomedcentral.com/arti...
2754 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for det...Unfortunately, the mapping and alignment of mate pair read pairs to a reference genome is a challenging and time con...2750 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and...inimal programming skills. High-quality prokaryotic genome assembly and annotation can b...2750 days ago
- ...ced by the growing number of full genome sequences available in pub...vailable to visualize and compare genomes and to infer evolutionary ev...ted. Here we present Genomicus, a new synteny browser that can represe...and compare unlimited numbers of genomes in a broad phylogenetic view...
2748 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al....2746 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses information from assemblies made with il...
2745 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliab...
2745 days ago
