QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.I...bsp;http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinforma...3002 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without...as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works b...3002 days ago
2994 days ago
2994 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
..._unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 This will perform the following: Remove adapters (ILLUMINACLIP:TruSeq3-PE.fa...2994 days ago
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2983 days ago
2983 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...owser RNA-Seq De novo transcript discovery and differential analysis with Cufflinks Differential expression analysis with R/Bioconductor Clustering of large expression datas...2983 days ago