Metassembler: merging and optimizing de novo genome assemblies
...ments of the individual assemblies. Genome assembly projects typically run multiple algorithms in an attempt to find the single best assembly, although those assemblies often have...2233 days ago
2229 days ago
2226 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of short reads gener...2218 days ago
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
...ads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively fi...2212 days ago
2210 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
...n mind. The method is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short and long reads. arX...2205 days ago
HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to...at based alignment approach) HALC was able to obtain 6.7-41.1% higher throughput than the existing algorit...2202 days ago
2196 days ago
SWALO: Scaffolding with assembly likelihood optimization
SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Please email your questions, comments, suggestions, and bug reports to atif.bd@gmail.com.2190 days ago