Results for "Whole genome re-sequencing"
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GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "b...n attempt to produce a realistic assessment of genome assembly software in a rapidl...of GAGE have now been published in the journal Genome Resear...2851 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications.... Users can interact with the genome using a powerful pan-and-zoom...e-write of CGView, a circular genome viewer written by Paul Stotha...2839 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes; cust...2828 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wall minutes)) scalable (Arbi...
2828 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for...e haploid or diploid pairs of incompatible loci can be spread throughout the genome and af...2827 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different...positions. Furthermore, multiple rearrangements in a single area of the genome can ma...
2827 days ago
- Development of cancer is driven by somatic alterations, including numeri...As) of chromosomal segments in tumor genomes. However, there is lack of c...romosomal CNA-associated breaks by a genome-wide approach, which can be a...Hybridization (CGH) or by (low-pass) whole genome...
2208 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis o...exa-reads, map them flexibly to several reference genomes using one of four different...t is furthermore compatible with software such as genome browse...
2824 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environme...es. One of the main challenges in analyzing a metagenome is phylogenetic classificatio...Such classification is a useful prerequisite for genome assemb...
2818 days ago
- Visualization has played an extremely important role in the current ge...nformation in read-to-reference or genome-genome alignments is lost for struct...d this problem by creating Ribbon (genomeribbon.com) an interactive onl...an also load coordinate files from whole genome aligne...
2807 days ago
