Results for "genome reports"
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EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data...ficial effect to identify novelCNVs in extra-exonic regions by having the full-genome...2741 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2741 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome...
2740 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of...e the best k-mer size, minimum abundance of correct k-mers, and genome...
2733 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed r...
2733 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX)...Perl Optional: BLAT or BLAST (to generate alignments against a reference genome)...2732 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-t...a single integrated solution in an easily accessible format. https://genomeb...
2730 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural varian...nfortunately, the mapping and alignment of mate pair read pairs to a reference genome...2726 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome...2726 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of...nforced by the growing number of full genome sequences available in public...ls available to visualize and compare genomes and to infer evolutionary ev...sent and compare unlimited numbers of genomes...
2724 days ago
