Results for "plant genome"
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Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscript...2770 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a da...-mer size, minimum abundance of correct k-mers, and genome size estimation for your data...
2764 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed represent...
2764 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) p...Perl Optional: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, add faToTwoB...2763 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both sta...le integrated solution in an easily accessible format. https://genomebiology.biomedcentral.com/arti...
2761 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for dete...nfortunately, the mapping and alignment of mate pair read pairs to a reference genome is a challenging and time con...2757 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can b...2757 days ago
- Comparative genomics remains a pivotal stra...nforced by the growing number of full genome sequences available in public...ls available to visualize and compare genomes and to infer evolutionary ev...sent and compare unlimited numbers of genomes in a broad phylogenetic view...
2755 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al....2753 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses information from assemblies made with il...
2752 days ago
