Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in s...2503 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches...ential and limitations of computational and experimental approaches to genome analysis.2494 days ago
2394 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and...2389 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly...n DNA sequences an important part of analysis pipelines. Here we use Taxobl...sequences. This or similar types of analysis, in combination with manual c...mic data to public repositories. Our analysis pipeline is open-source and f...2385 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinI...2385 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possib...s well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists. "T...2380 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observati...2380 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory a...embly & comparative genomics, variant identification & analysis, gene expression & regulation, personal genome analysis, and cancer genomics. The gra...2379 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2378 days ago