RNAseq data analysis links !
Last updated 2551 days ago by Robert M WilliomsRNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data analysis, including experimental design, quality control, read alignment,...-
Single Cell RNAseq data analysis tutorial !!
Last updated 2551 days ago by Robert M WilliomsA major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a large population of input cells Useful for comparative transcriptomics,...
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Illumina Smartphone Chip !!!
By Robert M Willioms 3613 days agoIllumina, the company that claims it brought human genome sequencing down to $1000 prices, has now turned its attention to a consumer product - a chip that you can plug into your smartphone and have it read your genetic information.
- By Robert M Willioms 2786 days agoPlotting nice coverage graph with R https:/
/ davetang.org/ muse/ 2013/ 09/ 07/ creating-a-coverage-plot-in-r/ #R #Plot #Coverage #NGS - By Robert M Willioms 3193 days agoThe #Development of #Computational Biology in #SouthAfrica: #Successes Achieved and #Lessons Learnt http:/
/ journals.plos.org/ ploscompbiol/ article?id=10.1371/ journal.pcbi.1004395 - By Robert M Willioms 3268 days ago
- By Robert M Willioms 3268 days ago
Foldit: Solve Puzzles for Science
By Robert M Willioms 2527 days agohttps://fold.it/ - Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Science, in collaboration with the UW Department of Biochemistry....SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
By Robert M Willioms 2534 days agogithub.com - SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
By Robert M Willioms 2551 days agocompcytogen.pensoft.net - "DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idiogram drawing as well as number of useful functions facilitating the procedure...Software developed in pevsner lab
By Robert M Willioms 3699 days agopevsnerlab.kennedykrieger.org - DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data...
