YASRA: Reference based assembler
...ove the performance, both in runtime and quality for 454 and Illumina sequence reads. YASRA uses LASTZ (http://bx.psu.edu/miller_lab for released version and http://www.bx.psu.edu/~rsharris/lastz/newer for new...2649 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representatio...2649 days ago
2649 days ago
2647 days ago
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2645 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
...enomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files th...2645 days ago
2637 days ago
Pacbio Long Reads Compatible Software and Tools
...tion to PacBio's own SMRT® Analysis suite. All packages are believed to be open source or freely available for non-commercial use. See the individual project sites for up-to-dat...2635 days ago
2620 days ago