Results for "Data Structure"
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caffMatch is a novel scaffolding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from NGS data (rea...2752 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of gene organiz...thus greatly facilitating the interpretation of the data. Availability: Genomicu... http://www.dyogen.ens.fr/genomicus while data can...
2749 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at a...2746 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a g...ate the reliability of each aligned column. Use sequence quality data ...
2745 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...f every gene in the experimentally verified Ecogene data set (except those containing...h great accuracy (96% of the 5' ends in the Ecogene data set...2736 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or ...elocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies su...hnologies and protocols. Process feature barcoding data such...1178 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome al.... In order to run the included tools (ex hal2maf) in the submodules/ directory structure, first source progressiv...
2717 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for compar...p researchers gain new insights into the underlying data. Such visualizations typicall...tion of additional information such as experimental data or a...2716 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best a...lity: YAHA is currently supported on 64-bit Linux systems. Binaries and sample data are...
2714 days ago
- BioDownloader is a program for downloading and/or updating files from ft...designed to deal with bioinformatics data files and servers: optimized to work with vast amount of data and very large file sets (~ 1...nization needs, including the Protein Data Bank...
2677 days ago
