Results for "Genome Size"
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The objective of this activity is to help you understand how to run Velvet in general, how to accurately estimate the insert size of a paired-end library throu...2747 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV...from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tan...
2746 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-th...n a single integrated solution in an easily accessible format. https://geno...
2746 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Wei...pair; -i) (Comma separated list of) insert size(s) of the library(-ies); &nb...t of) library(-ies) standard deviation(s) of insert size(s); -t) Bundle thresh...
2743 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...ately, the mapping and alignment of mate pair read pairs to a reference genome is a challenging and time consuming process for most NGS alignment programs. Large insert sizes, introduction of library pre...2742 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic geno...2741 days ago
- Comparative genomics remains a pivotal strategy to study the evolution of...nforced by the growing number of full genome sequences available in public...ls available to visualize and compare genomes and to infer evolutionary ev...sent and compare unlimited numbers of geno...
2740 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al...2737 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger....all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it imp...
2737 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses information from assembl...
2737 days ago
