Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help b...others do non-phylogenetic multivariate analysis. Because it is modular, the analyses available depend on the modul...2540 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of...ces such sequences for ancestral genomes at the internal nodes of the...rrangements and allows the input genomes...2533 days ago
2532 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation editor available...there are more and more researchers sequencing new genomes. These researchers require to...e the functional features of their newly sequenced genomes....2530 days ago
2527 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to...al issues with the dataset are described, and prospects for assembling larger genomes...2428 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp) re...e evaluate the performance of QuorUM by correcting actual Illumina reads from genomes...2427 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-rea...2425 days ago
2421 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequen...anslation exceptions, and orthologous gene assignment between given reference genomes....2421 days ago