2557 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite...se data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis f...sp;fully analyzed next-generation sequencing data. Experimental results ca...2547 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written...2550 days ago
2543 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to comp...informatics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques, the utility of tr...2528 days ago
2527 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation...the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researcher...2525 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often.... However, there is enough information in the reads to correct most of the sequencing errors, thus making subsequen...2422 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxo...2407 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (E...seeds, and outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to these. https...2407 days ago