CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The...2613 days ago
Barrnap: Bacterial ribosomal RNA predictor
Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archae...x and Mac OS X are included and will be auto-detected. Multithreading is supported and one can expect roug...2606 days ago
CABOG: Celera Assembler with Best Overlap Graph
...billions of letters long from the hundreds of letters per read that modern sequencers provide. What these programs do is often described as a scaled up version of a family solving a...2603 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...first version of NCBI Prokaryotic Genome Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced with an upgraded version that is capable...2602 days ago
ANGES: reconstructing ANcestral GEnomeS maps
...cting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated in August 2014) Example...2600 days ago
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SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of conti...2594 days ago
AVID: A Global Alignment Program
...al alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We present...2594 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...bsp;hidden markov models (HMMs) and phylogenies of the signature domain regions in each and every CAZyme family and subfamily. dbCAN is updated regularly when CAZy...2589 days ago