Results for "Whole genome"
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...S-based mode) synteny to the genome of some related species (refe...e, pyScaf uses synteny to the genome of closely related species in...bly on simulated heterozygous genomes based on C. parapsilosi...divergence between reference genome and assembled contigs is belo...2745 days ago
- Mauve is a system for constructing multiple genome alignments in the presence of l...ngement and inversion. Multiple genome alignments provide a basis fo...ative genomics and the study of genome-wide evolutionary dynamics...., a pair of Y. pestis genomes can be aligned in under a mi...
2023 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap...-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes often have long repetitive r...
2745 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chrom...synteny correspondences in Plant Genome Duplication Database. It is i...rved gene arrays both within the same genome and across different genomes....
2743 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genef...very vanilla C). It can analyze an entire microbial genome in 30 seconds or less. Accur...Indifferent: Prodigal performs well even in high GC genomes, with over a 90% perfect mat...2736 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Commu...microbial communities, or metagenome binning, enables the study of...we developed an automated metagenome binning software, called Meta...uman gut samples formed 1,634 genome bins (>200kb) in 3 hours,...
2669 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirement...150GB+ of memory on at least one machine when aligning mammal-sized genomes; less memory is needed for s...
2717 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...e number of completely sequenced genomes is continuously rising, all...Such analyses are often based on whole-genome alignments to elucidate struc...ational tools that can visualize genome alignments in a meaningful ma...ormatics/article/28/12/i7/268598/GenomeRing-alignment-visualization-b...2716 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW...for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.wustl.edu/people/groups/detai...
2714 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindb...n, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analysis and interpretation....
2714 days ago
