Results for "genome letters"
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LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality...2746 days ago
- pyScaf orders contigs from genome assemblies utilising several typ...S-based mode) synteny to the genome of some related species (refe...e, pyScaf uses synteny to the genome of closely related species in...bly on simulated heterozygous genomes based on C. parapsilosi...
2746 days ago
- Mauve is a system for constructing multiple genome alignments in the presence of large...arrangement and inversion. Multiple genome alignments provide a basis fo...mparative genomics and the study of genome-wide evolutionary dynamics....mple, a pair of Y. pestis genomes...
2023 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes...
2745 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions...ng the synteny correspondences in Plant Genome Duplication Database. It is i...y conserved gene arrays both within the same genome...
2743 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a mi...ery vanilla C). It can analyze an entire microbial genome in 30 seconds or less. Accur...ndifferent: Prodigal performs well even in high GC genomes...2736 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communit...ex microbial communities, or metagenome binning, enables the study of...re we developed an automated metagenome binning software, called Meta...4 human gut samples formed 1,634 genome...
2669 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2...150GB+ of memory on at least one machine when aligning mammal-sized genomes...
2717 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing fo...ch analyses are often based on whole-genome alignments to elucidate struc...mputational tools that can visualize genome alignments in a meaningful ma...oinformatics/article/28/12/i7/268598/GenomeR...2716 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best ali...for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome....
2714 days ago
