Results for "DU"
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...preparation and computer setup, through addressing biological questions with gene expression and SNP data. http://sfg.stanford.edu/denovo.html http://sfg.stanford.edu/sequencing.html http://sfg.s...2642 days ago
TMAP - torrent mapping alignment program General Notes
...nd accurate alignment software for short and long nucleotide sequences produced by next-generation sequenc...e: git clone git://github.com/iontorrent/TMAP.git cd TMAP git submodule init git submodule update...2642 days ago
- ...hnologies, the computational resources needed for HTS, and how to analyze non-model species using HTS. The course consists of a practical training module, HTS bioinformatics trainin...
2639 days ago
WGS Celera Assembler version 8.3rc2
...tools], [http://www.cbcb.umd.edu/software/jellyfish/ Jellyfish...be urbe 990K Apr 10 11:41 buildUnitigs-rwxrwxr-x 1 urbe urbe&n...urbe urbe 162K Apr 10 11:40 deduplicate-rwxrwxr-x 1 urbe urbe&...bsp; 88K Apr 10 11:41 runCA-dedupe-rwxrwxr-x 1 urbe urbe ...2634 days ago
- UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix la...
2630 days ago
DeCoSTAR - Detection of Co-evolution
...pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciation, duplication, loss, transfer, whi...2630 days ago
ChromHMM: Chromatin state discovery and characterization
...enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide map...2625 days ago
- ...table for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,0...
2617 days ago
Enrichr: a comprehensive gene set enrichment analysis
...search engine that accumulates biological knowledge for further biological discoveries. Enrichr is freely available at: http://amp.pharm.mssm.edu/Enrichr. https://academic.ou...2617 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it represents...To know that you have to ali...
2612 days ago
