Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly a...orthologous and paralogous copies in all the other sequenced metazoan genomes....2417 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes inclu...bioinformaticians interested in the structure and evolution of genomes....2417 days ago
2415 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive t...ished genome of the kelp Saccharina japonica. Analyses were based on multiple blastn...ute a useful complement to standard bioinformatics analyses prior to submission of genomi...2412 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-ma...eds improvements. Miniasm confirms that at least for high-coverage bacterial genomes,...2408 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wiki...ith features for the assembly of large and complex genomes.Song Gao, Denis Bertrand, Bur...exact scaffolding of large, repeat-rich eukaryotic genomes...2408 days ago
Computational Genomics: Applied Comparative Genomics
...n theory and leave the course empowered to conduct independent genomic analyses. We will study the lead...computational and quantitative approaches for comparing and analyzing genomes starting from raw sequencing d...2406 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to fin...asets. It is very useful to quantify the proportion of TEs in newly sequenced genomes...2403 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads&n...a sets. Based on a database of given genomes, the program allows the user...ome by specifying the number of genomes present at different levels o...es evolved sequences based on source genomes...2401 days ago
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics2398 days ago