Results for "N"
Bookmarks
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).Phyl...erates custom graphs for a given set of elements. In general, it is possible...3089 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq3090 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis s...LX or Titanium) Ion Torrent Solexa (Illumina) seque...is, without me actually putting too much manual work into it...
3089 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragment....nlm.nih.gov/pubmed/23307812 http://bioen-compbio.bioen.illinois.edu/RA...3089 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized an...ory. PEAR evaluates all possible paired-end read overlaps and without re.... Together with a highly optimized implementation, it can merge millions...3089 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple...u/quast http://bioinformatics.oxfordjournals.org/content/early/2013/03/...3089 days ago
REAPR: a universal tool for genome assembly evaluation
...l that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It c...matically break incorrect scaffolds and flag other errors in an asse...paired reads mapped to the assembly in a BAM file. Mapping informati...3089 days ago
- SCALCE (/skeɪlz/, a.k.a. boosting Sequence Compression Algorithms using Locally ConsistentEncoding) is a tool for compressing FASTQ files. It is designed specifically for the Illumi...
3081 days ago
- Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequence GC content per seq...cs.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/
3081 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.f...put_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruS...the following: Remove adapters (ILLUMINACLIP:TruSeq3-PE.fa:2:30:10)...3081 days ago
