Results for "OS"
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Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by SourceForge.net. Th...2773 days ago
- GoJS is a feature-rich JavaScript library for implementing custom interactive diagrams and complex visualizations across modern web browsers and platforms. GoJS makes constructing J...
2773 days ago
- ...he reference genome of the species. However, in most typical protocols, this info...allows researchers to reconstruct genomes very closely related to the reference g...n very quickly, and at no additional sequencing cost, generate new, modified refe...
2770 days ago
- ...tute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignme...m for high-sensitivity, genome-wide synteny; Papaya, an all-purpose alignment tool for less dive...
2767 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2765 days ago
- ...nd pairs merging. After that biodiversity is searching. There are two types of searching depending on the amplicons types (ITS or 16S). If WGS are chosen, then bipype finds the SA c...
2764 days ago
- ...nbsp;files. Various file manipulations are supported. See below for a full list of the subcommands available and a brief description of their purpose. Most of the individual subcommand...
2757 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV ca...on of discordant read pairs. PRISM_CTX is a tool for detecting inter-chromosome trans-location events.&nbs...
2755 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no i...s parameters in an assembler is often performed in order to generate the most optimal assembly. However, f...2750 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...and economical method for detecting genomic structural variants and chromosomal abnormalities. Unfortunat...rs to a reference genome is a challenging and time consuming process for most NGS alignment programs. Larg...2751 days ago
