Results for "Ra"
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...their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To...2945 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data...
2945 days ago
- ...blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visua...blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visua...nies the paper:Blobology: exploring raw genome data for contaminants...te and collate GC content, read coverage and taxon annotation for th...
2935 days ago
- ...g (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can...is report, or executed individually to generate specific charts and tables....bly composed of, how well those pieces accurately represent the genome sequ...
2934 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence dat...lows the simultaneous display of GC content, coverage, and taxonomic annotation for collections of contigs with a view to separating out those belonging to di...
2934 days ago
- ...ced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Seq 20...
2218 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate h...you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then sel...culator written by James Hadfield. Coverage is calculated as C=LN/G and...2218 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...iological specimens is a major requirement for a range of applications. Reference...prior knowledge, but these do not scale to arbitrarily large genomes and arbitra...tic distances. Results: We present Cnidaria, a practical tool for clustering gen...2931 days ago
- ...L, Han Y and He Q (2012). “clusterProfiler: an R package for comparing biological themes among gene clusters.” OMICS: A Journal of Integrative Biology, 16(5), pp. 284-2...
2931 days ago
- ...rkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atyp...ede novo predictions of horizontally transferred proteins, but can als...es are unlikely to have been horizontally transferred, since they are highl...
2926 days ago
