Results for "WA"
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WGS Celera Assembler version 8.3rc2
...notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.Thi...a stable, tested, documented version of the software. The distribution is...rge.net/ SAMtools], [http://www.cbcb.umd.edu/software/jellyfish/ Jellyfish 2.0],...2641 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in th...of adjacencies, and contains in particular all the features of previous software DeCo, DeCoLT, ArtDeCo and D...2637 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate m...s that can be directly visualized in a genome browser. ChromHMM software v1.12 (version log) C...2632 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein se...
2624 days ago
- ...nome sequence but sometimes, a library of EST sequences is used.In either way, aligning your sequence read...uence is called mapping. The most used mappers of DNA-seq data are BWA and Bowtie for...
2619 days ago
- ...s corresponding quality scores. Both the sequence letter and quality score are each encoded with a single ASCII character for brevity. It was originally developed at the&...
2618 days ago
CLA: Contig-Layout-Authenticator
...CLA also hints at probable misassemblies and contaminations, for the users to cross-check before constructing the consensus draft. The CLA pipeline was designed and trained extensi...2616 days ago
- ...al will be referred to simply as “Species” since it is live data. This data is paired-end data, meaning that there are forward and reverse reads, which we...
2616 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of p...r an earlier assembly, onto the latest assembly. PAGIT bundles these software and makes them more accessi...2609 days ago
CABOG: Celera Assembler with Best Overlap Graph
...st Overlap Graph) is scientific software for DNA research. CABO...tension of the Celera Assembler software that was originally develop...raft human genome sequence. The software was released to the public...ing a jigsaw puzzle. The CABOG software was the first to accomplish...2606 days ago
