Results for "genome overlapping features"
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LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome...2730 days ago
- pyScaf orders contigs from genome assemblies utilising several typ...e, pyScaf uses synteny to the genome of closely related species in...erence is kept) and removing overlapping matches on reference....bly on simulated heterozygous genomes based on C. parapsilosis&nbs...
2730 days ago
- Mauve is a system for constructing multiple genome alignments in the presence of large-sc...rearrangement and inversion. Multiple genome alignments provide a basis fo...comparative genomics and the study of genome-wide...example, a pair of Y. pestis genomes...
2007 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes...
2729 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and...rating the synteny correspondences in Plant Genome Dupl...ntify conserved gene arrays both within the same genome a...
2727 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algo...and the University of Tennessee. Key features of Prodigal include: Spe.... It can analyze an entire microbial genome in 3...odigal performs well even in high GC genomes, with over a 90% perfect match...2720 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities...mplex microbial communities, or metagenome binning, enables the study of...Here we developed an automated metagenome binn...,704 human gut samples formed 1,634 genome b...
2653 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2...ment 150GB+ of memory on at least one machine when aligning mammal-sized genomes;...
2701 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for c...Such analyses are often based on whole-genome alignments to elucidate struc...Computational tools that can visualize genome alig.../bioinformatics/article/28/12/i7/268598/GenomeRi...2700 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding...ilable for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.w...
2698 days ago
