DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs...2617 days ago
ChromHMM: Chromatin state discovery and characterization
...roduces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser. ChromHMM software v1.12 (version log) ChromHMM...2612 days ago
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Enrichr: a comprehensive gene set enrichment analysis
...vailable for analysis and download. In total, Enrichr currently contains 180 184 annotated gene sets from 10...pharm.mssm.edu/Enrichr. https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw3772604 days ago
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Barrnap: Bacterial ribosomal RNA predictor
...on of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) an...FF3 as output. It uses the new NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA...2589 days ago
CABOG: Celera Assembler with Best Overlap Graph
...large genomes such as mammalian. CABOG is an extension of the Celera Assembler software that was originally developed at Celera for the 2001 publication of the first draf...2586 days ago