Results for "IG"
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...folding tool based on Maximum-Weight Matching able to produce high-quality scaffolds from NGS d...ash script wrapper that calls aligner in case one needs to first...uced after mapping reads to contigs and the resulting scaffolds...Bundle threshold. Pairs of contigs supported by number of read...2761 days ago
CISA: Contig Integrator for Sequence Assembly
...pursued to take advantage of multiple assemblies to yield an assembly of high accuracy. In this study, we...loy various state-of-the-art assemblers to generate different sets of contigs for bacterial genomes. A too...2759 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...abnormalities. Unfortunately, the mapping and alignment of mate pair read pairs...enging and time consuming process for most NGS alignment programs. Large insert s...breakpoints within reads increases mapping and alignment complexity. We describe...2760 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome a...e obtained with ease. It performed better than de novo assemblers and contig integration software. Produce...2759 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The sourc...2759 days ago
- ...hus limiting the breadth and the nature of the question that can be investigated. Here we present Genomicu...bsp;ftp://ftp.biologie.ens.fr/pub/dyogen/genomicus Contact: rf.sne.eigoloib@crh
2758 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...anger sequencing. Despite this, some old problems have become even more difficult, de novo assembly being on top of this list. Despite efforts to design tools able to assemble, de n...2755 days ago
GARM:Genome Assembly, Reconciliation and Merging
...Debian, Ubuntu, Fedora and BioLinux distributions. The method merges contigs or scaffolds from different...ions or extensions (CE) problems in the assemblies can be per-formed; contigs are joined back into scaffol...2755 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...e two or more assemblies in order to enhance contiguity and correctness of both. GAM-NGS does not rely on global alignment: regions of the two asse...through reads' alignments and stored in a weightedgraph. The merging phase i...2755 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallel...statistical test for minimizing false-positive results. Together with a highly optimized implementation,...
2755 days ago
