Results for "RA"
Bookmarks
Horizontal gene transfer (HGT), the transfer of genetic material betw...closely related species or strains is challenging, as the phy...virulent and drug-resistant strains is crucial, and often time...of three E. coli strains and detected several highl...2902 days ago
Linux command line exercises for NGS data processing
...~/]$ cd linuxTutorial [uzi@quince-srv2 ~/linuxTutorial]$ I have deliberately chosen Awk in the exercis...na Amplicons Processing Workflow. In Linux, we use a shell that is a program that takes your commands fro...2901 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tutorial...AboutSAMtools is a popular open-source tool used in next-generation sequence analysis. This p...
2900 days ago
- ...mulate reads with uniform substitution sequencing errors. It does not generate INDEL sequencing errors, bu...lymorphisms and sequencing errors in read names. One can evaluate the accuracy of a mapper or a SNP caller...
2900 days ago
- ...of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and python in...orming down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently...
2894 days ago
- ...at distal genomic locations can interact with each other via chromat...enomic technologies for mapping interactions between DNA regions, e....ense of these datasets demands integrative and easy-to-use software...lding and visualizing chromatin interaction networks, 2) annotating...
2896 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic...enomic DNA sequences. Previous programs designed for this task have...se faster abundance estimation programs, which only classify small...AST program. In its fastest mode, Kraken classifies 100 base pair r...2896 days ago
- Kaiju is a program for the taxonomic classification of...e database containing microbial and viral protein sequences. By defau...ngi and microbial eukaryotes. Kaiju translates reads into amino acid...minute using, for example, only 10 GB RAM with a protein database comp...
2896 days ago
- ...downloading. The data and tools presented by greengenes can assist the researcher in choosing phylogenetically specific probes, interpreting microarray results, and aligning/annota...
2894 days ago
- ...dentify patterns in data. These techniques can be used to make highly accurate predictions. Keep scrollin...achine learning model to distinguish homes in New York from homes in San Francisco.
2892 days ago
