MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more e...2214 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thou...2211 days ago
2210 days ago
LAMSA: fast split read alignment with long approximate matches
...align them to solve the small variations or sequencing errors, and mitigate the effe...eal datasets having various read lengths and sequencing error rates, the results demo...nter for Bioinformatics, Harbin Institute of Technology, China.2210 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DN...r speed and accuracy across diverse sequencing technologies, including but n...reads (Illumina HiSeq) clone-based sequencing (Fosmid or BAC clones) SMRT...rate haplotype assembly for diverse sequencing...2210 days ago
Circlator: automated circularization of genome assemblies using long sequencing reads
A tool to circularize genome assemblies. The algorithm and benchmarks are described in the Genome Biology manuscript....ation: "Circlator: automated circularization of genome assemblies using long sequencing...2210 days ago
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2197 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works...2197 days ago
SWALO: Scaffolding with assembly likelihood optimization
SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Please email your questions, comments, suggestions, and bug reports to atif.bd@gmail.com.2175 days ago