Results for "data analysis"
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Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a m...f every gene in the experimentally verified Ecogene data set (except those containing...h great accuracy (96% of the 5' ends in the Ecogene data set...2735 days ago
- ...tetranucleotide frequency. Tested on both synthetic and real metagenome datasets, MetaBAT outperforms alte...>50% complete with <5% contamination from other species. Further analysis shows that the quality of the...
2668 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or ...elocity and single-nuclei RNA-seq analsis Quantify data from numerous technologies su...hnologies and protocols. Process feature barcoding data suc...1177 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2716 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for compar...p researchers gain new insights into the underlying data. Such visualizations typicall...tion of additional information such as experimental data or...2715 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best a...lity: YAHA is currently supported on 64-bit Linux systems. Binaries and sample data are...
2713 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D...rth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analysis and interpretation. Nat Meth...
2713 days ago
- BioDownloader is a program for downloading and/or updating files from ft...designed to deal with bioinformatics data files and servers: optimized to work with vast amount of data and very large file sets (~ 1...nization needs, including the Protein Data Ban...
2676 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element of data. Instead, MCE follows a bank q...el. Imagine the line being the data and bank-tellers the parallel...e module. MCE::Queue exchanges data via the core engine to enable...d in 1.506, allows one to pass data fro...2702 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It pr...to the precomputed trees, users can upload and display personal trees and data, using the 'Data upl...2702 days ago
