Results for "genome reports"
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GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived fro...e rearrangements, insertions or deletions of genome segments between species or s...enomic sequences, especially closely related genomes...2678 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a...rs with sequence homology along with their genome coordinates. Using a scoring...ne large evolutionary conserved regions of genomes...2678 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome....
2671 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any given...port findings regarding errors in sequencing. The method can be used for whole genome...2671 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained...y fills or reduces as many captured gaps as possible to produce upgraded draft genomes...2668 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping read...or aligning the sequences to the reference genome....2666 days ago
- A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even when the depth of coverage is insufficient for de novo assembl...
2666 days ago
- CLgenomics is a standalone desktop software specifically designed for bacterial genome analysis. This program has a powerful multi-genome browser, which enables rapid and r...es. To use CLgenomics, individual genome data (genome sequences + anno...y available Bacterial and Archaeal genomes...
2664 days ago
- This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bac...ia obtained by differential coverage binning of multiple metagenomes...
2664 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SM...2661 days ago
