Results for "Genome Sequence"
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...ement and inversion. Multiple genome alignments provide a basis fo...ive genomics and the study of genome-wide evolutionary dynamics....scale well in the lengths of sequences being aligned. For example...a pair of Y. pestis genomes can be aligned in under a minu...2027 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method would have been enough to assemble large genomes from Sanger reads. In contrast, real genomes often have long repetitive reg...
2749 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions...ng the synteny correspondences in Plant Genome Duplication Database. It is i...y conserved gene arrays both within the same genome a...
2748 days ago
- Motif based sequence analysis suits The MEME Sui...of unaligned nucleotide or protein sequences, and to perform a wide varie...d analysis of DNA, RNA and protein sequences. It provides motif discovery...Suite provides tools for scanning sequences for matches to motifs (FIMO,...
2746 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...t can analyze an entire microbial genome in 30 seconds or less. Accur...gal performs well even in high GC genomes, with over a 90% perfect mat...n in metagenomic mode and analyze sequences even when the organism is un...n in one step on a single genomic sequence or on a draft genome containi...2741 days ago
- ...bled from shotgun metagenomic sequences to deconvolute complex microbial communities, or metagenome binning, enables the study of...we developed an automated metagenome binning software, called Meta...uman gut samples formed 1,634 genome bins (>200kb) in 3 hours, wh...
2674 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2...150GB+ of memory on at least one machine when aligning mammal-sized genomes;...
2722 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing...analyses are often based on whole-genome alignments to elucidate struc...tational tools that can visualize genome alignments in a meaningful ma...formatics/article/28/12/i7/268598/GenomeRing-alignment-visualizatio...2720 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best ali...for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.w...
2718 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D...Garrison, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome a...
2718 days ago
