Results for "NT"
Bookmarks
...ductor version: Release (3.3)This package implements methods to analyze and visua...ang Yu <guangchuangyu at gmail.com> with contributions from Li-Gen Wang and...among gene clusters.” OMICS: A Journal of Integrative Biology, 16(5), pp. 2...2935 days ago
- ...atic method for rapid, automated identification and ranking of phylo...de basis. It works by selecting potential ortholog matches from a re...lede novo predictions of horizontally transferred proteins, but...res are unlikely to have been horizontally transferred, since they a...
2929 days ago
- Horizontal gene transfer (HGT), the transfer of...ertically derived) genes in its recipient genome. Detecting HGT between...tide composition is normally nearly identical. Nevertheless, there is a...med Near HGT, based on the synteny index, to measure the dive...
2929 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as givin...xperience in writing one-liners. Copy the required files to your current directory, change directory (...2929 days ago
- ...ng, bowtie, sam, bam, primer, tutorial, how-to, introductionRevisions ...sp; 1.1: July 24, 2013: Updated with Disqus Comments / Feedback section. &nb...tion sequence analysis. This primer provides an introduction to SAMtools, and is...
2928 days ago
- ...iological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leve...s while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX, M...
2922 days ago
- Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its...given combination of properties. To decode a given SAM flag value, just enter the number in the field bel...
2922 days ago
- Recent studies of the human genome h...distal genomic locations can interact with each other via chro...mic technologies for mapping interactions between DNA regions,...of non-coding regulatory elements and to facilitate prioritiza...or the analysis of chromatin interaction datasets. To fill thi...
2924 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...xpensive, forcing researchers to use faster abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-mers, Kraken achieves cl...2924 days ago
- ...xonomy by comparing it to a reference database containing microbial and viral pro...RefSeq or the microbial subset of the non-redundant protein database nr used by N...ng a modified backward search on a memory-efficient implementation of the Burrows...
2924 days ago
