Results for "PA"
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Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-a...2008 days ago
- ...takes as input assembled contigs, paired-end and/or mate pairs sequencing libraries ...affolding: joining of genome fragments using paired-end and/or mate-pairs rea...(Illumina, 454 or Sanger) and library types (paired-end, mate pairs, fosmids)...
2860 days ago
- ...diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colour and to also visu...lignments and co-variation information.R4RNA is the R package powering R-chie, availab...
2860 days ago
- ...ck the samples gallery to make sure that your data format is compatible. Your file must be&nb...ext. Your data values must be non-negative integers. Data must be space-separated (one or more ...
2859 days ago
- ...ndreds of scientists had to raise funds together by writing a joint white-paper and petitioning to various...acilities, of which only a few existed around the globe. Naturally, the capacities at those sequencing fac...
2856 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a ch...It was developed by the bioinformatics department at The Institute for Ge...ines and University of Maryland: College Park to support a number of rese...
2854 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between genome...
2854 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of...2854 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence...e_assembly). It uses information from paired-end/mate-pair/long reads...with the information provided by the paired-end/mate-pair/long reads...d-generation sequencing technologies (PacBio or Oxford Nanopore). The...2852 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina ...reads.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-ind...mi provides a tool to fix misassemblies by using paired-end reads to achieve...
2852 days ago
