2612 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs th...used by the original assembler. iCORN, that enables errors in the consensus sequence...2604 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA rese...e 2001 publication of the first draft human genome sequence. The software was released to...from the hundreds of letters per read that modern sequence...2602 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...ounts for 96.8% of the available human genome sequence data. The precision is furthe...ased by mapping inversions as small as 31 bp. Analysis of the predicted evolutionary...gh only a few mammalian genomes are currently sequenced to high precision, our theor...2599 days ago
2596 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes...n a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2594 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence...2593 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce geno...p decide between alternative sequencing methods for a sequence...2593 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct s...2593 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbohydrate-active...ll the relevant full-length CAZyme proteins in all sequenced genomes; dbCAN provide...tion of the existing CAZyme families based on sequence...2588 days ago