kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...;is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is b...1997 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...ly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to building contigs and anal...https://bioinformaticsdotca.github.io/high-throughput_biology_2017...1984 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...of molecules, generation of tautomers, molecule fragmentation, calculation of various molecular properties needed in QSAR, molecular modelling and drug design, high quality molecule...1984 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...25kb window (with some small overlap) for every region in the genome. The default is to use only clipped, discordant, unmapped and indel reads, although this can be customized to an...1982 days ago
ansible: Simple, agentless IT automation that anyone can use
Ansible is a universal language, unraveling the mystery of how work gets done. Turn tough tasks into repeatable playbooks. Roll out enterprise-wide protocols with the push of a button. Give your team the tools to automate, solve, and share.1896 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a user-specified s...1868 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat re...1852 days ago
gEVAL: Genome Evaluation Browser
The gEVAL Browser allows the evaluation of genome assemblies through its tools and pre-computed analyses. The strength of this browser is the ability to navigate an up to...1835 days ago
FLAS: fast and high throughput algorithm for PacBio long read self-correction.
FLAS, a wrapper algorithm of MECAT, to achieve high throughput long read self-correction while keeping MECAT's fast speed. FLAS finds additional alignments from MECAT prealigned long reads to improve the correction throughput, and removes misalignments for accuracy.1831 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...lities, multiplexing, and optical/PCR duplicates. All outputs can be written to standard file formats. A swift, versatile phylogenomic and high-throughput sequencing simulator htt...1797 days ago