CABOG: Celera Assembler with Best Overlap Graph
...has been a critical component of many genome sequencing projects. CABOG operates on small genomes such as bacterial as well as...publication of the first draft human genome sequence. The software was re...at a time. These programs reconstruct genomes that are billions of letters...2602 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designe...nnotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level p...loped an automatic prokaryotic genome annotation pipeline that comb...https://www.ncbi.nlm.nih.gov/genome/annotation_prok/...2601 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...inting experiments to produce a map of an early mammalian genome that accounts for 96.8% of the available human genome sequence data. The precision...ds were developed as part of a project to reconstruct the genome sequence of the last ancestor...2599 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentat...2599 days ago
2599 days ago
Pollux: platform independent error correction of single and mixed genomes
...r corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcti...2598 days ago
2597 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...existing HTS scaffolders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a...result is further improved when additional data, in the form of related genome sequences, are used.2594 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...emblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneratio...2594 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
...uencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. https://bmcbioinformati...2593 days ago