2598 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-genera...ffolds, but makes fewer errors. This result is further improved when additional data, in the form of related genom...2596 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of...2595 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...omic, metagenomic, transcriptomic, metatranscriptomic, proteomic, metaproteomic shotgun and amplicon datasets from current sequencing technologies such as Sanger, 454, Illumina. These simulated datasets can be used to test the a...2595 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
dbCAN is a web server and DataBase for automated Carbo...rces on the web include CAZy database and CAT. All da...ily classification from CAZy database while it has the fol...ies; dbCAN make all pre-computed data freely available to the publi...2590 days ago
2590 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262579 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
BEDOPS v2.4.26 is a suite of tools to address common que...egard to overlap and proximity relationships between data sets. It aims to be scalable...urate analysis and management of large-scale genomic data. The overview section of the...2576 days ago
2562 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphica...ext-gen analysis for next-gen data! Some of GeneProf's highligh...b-based interface:Access your data at any time from any computer...le modules:Advanced users and data analysis experts benefit from...al 'Examining Public Next-Gen Data..'). Extensibility:Algorithm...2552 days ago