Results for "AP"
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...ur basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as follows:...formed in protein space. Construct a graph with each vertex correspondi...2708 days ago
FSA: Fast Statistical Alignment
...lignment algorithm which uses a "distance-based" approach to aligning homologous...SA uses machine-learning techniques to estimate gap and substitution parameters o...ery different evolutionary constraints. FSA is capable of aligning hundreds or e...2708 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...A polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses...2708 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...o analyse your genome. Sorry if you were misled by the punchy name! About Chromosome Painting Painting is an efficient way of identifying important haplotype information from dense...2701 days ago
- ...am plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations...i A bed file of reference contig lengths/chromosome names --heatmap, -h Fill chromosomes with...
2701 days ago
- ... is a rational visualization method for drawing networks. Nodes are mapped to and positioned on radially distributed linear axes — this mapping is based on network struc...
2698 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs...rocessed to generate a pseudomolecule taking overlaping contigs and gaps in to acc...
2698 days ago
- ...e cross-platform (Windows/Mac/Unix) application that can display cir...handling genome assembly data. The application is available at:http...yed for draft genomes; customized graphs and annotations can be disp...IG also accepts SAM-formatted read-mapping files enabling genomic re...
2698 days ago
- ...other sequence features like repeat sequence distributions in one whole-genome DNA sequence by comparing the genome to itself.It is a stand-alone graphical user interface (GUI) pro...
2697 days ago
- ...d pair-wise alignment algorithms. The results of these comparative analyses are also displayed in the 3D environment of Sockeye. By using the Java3D API to visualize genomic data in...
2697 days ago
