2678 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SM...2675 days ago
2675 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular ali...ing databases. SeqMule can be used for both Mendelian disease study and cancer genome...2674 days ago
2667 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT&...lling RNA analysis Epigenetic base modifications and methylation Barcoding Genome...2666 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting cov...r subtract bins with each other. Tool at https://github.com/kbseah/genome-...2655 days ago
2645 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighb...or the possibility to handle badly assembled genomes. DeCoSTAR is able to re...ion and fission events, as well as ancestral genome...2636 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can int...odel can then be used to systematically annotate a genome in one or more cell types. By...n of each state. ChromHMM also produces files with genome-...2631 days ago