Results for "NGS data analysis"
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fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running C...ainter, finestructure and ChromoPainter for RAD tag data used for non-model organisms....important haplotype information from dense genotype data. It...2690 days ago
- maftools - An R package to summarize, ana...er type being over 200. The resulting data consisting of genetic variant...r any in-house studies as long as the data is in MAF format. Maftools ca...nd H.P. Koeffler, Maftools: Efficient analysis, visualization and summarizat...
2687 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can d...h a focus on handling genome assembly data. The application is available...e and other sequences as concentric rings. BRIG will perform all BLAST...mes or even raw, unassembled sequence data. B...
2687 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotation inf...y import their own custom sequence and annotation data. Individual annotation object...eye. By using the Java3D API to visualize genomic data in...
2686 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that c...as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover disp...(Windows, MacOS, Linux). Users can input data int...
2686 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used t...
2679 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic m...ons. In the process, they report findings regarding errors in sequencing...whole genome shotgun (WGS) sequencing data. They also show applicability...ation. Results for simulated and real datasets...2679 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...ons. For such studies, Strand NGS v3.1 includes confounding variable analysis to eliminate technical ef...he accuracy and efficiency of NGS data analysis. Customers can look forward t...gnostics and clinical genomic data interpretation using a strong fou...2438 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2676 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJe...2676 days ago
