Results for "Ra"
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VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated...2679 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) betw...tover genome coordinates between assemblies. It’s not a program for aligning sequences to re...
2851 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open so...ders are closely tied to a specific assembly program, Bambus accepts the output f...great flexibility in choosing the scaffolding parameters. In particular, Bambus...
2871 days ago
- ...ithout a reference genome. It is an exact local transcriptome assembler that allo...native splicing events. It can deal with an arbitrary number of biological condit...for 100M reads. KisSplice is not a full-length transcriptome assembler. This mea...
2871 days ago
- ...at the correct distance from each other in the assembly, the depth of coverage is fairly uniform along con...aring multiple assemblies of the same data-sets, VALET also reports an overall estimate of the likelihood...
2834 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic...rmation stored in GenBank entries to graphical maps. The input text fi...output format can be chosen among several formats. The application is...steps. More at http://ogdraw.mpimp-golm.mpg.de/cgi-bin/og...
2871 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which e...
2869 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2869 days ago
- Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.
2865 days ago
- ...nbsp;assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of scaffolds...e assemblies. In brief, our scripts create Cytoscape files to visualize transcript evidence that suggests...
2863 days ago
