Results for "Whole genome re-sequencing"
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TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation...2646 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constructi...exons against all exons in other genomes and record significant align...have exons in all or most of the genomes), joi...
2701 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number...hism data; (iv) visualizing sliding window results integrated with available genome annota...2701 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCT...or methodology for Chromosome Painting. It is not a facility to analyse your genome. Sorry...2694 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Gen...AF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas...
2691 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes; cust...
2691 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison resu...nts, insertions or deletions of genome segments between species or s...ces, especially closely related genomes such as inter-species or int...t sequence distributions in one whole-genome...
2690 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and provid...
2690 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a...s with sequence homology along with their genome coordinates. Using a scoring...e large evolutionary conserved regions of genomes betwe...2690 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For e...
2683 days ago
