ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated...2598 days ago
2598 days ago
Pollux: platform independent error correction of single and mixed genomes
...che 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcti...r errors while remaining sensitive to low coverage areas of sequencing projects. Using published data sets,...2597 days ago
2596 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation...ers using Illumina paired reads of three bacterial genomes. Our algorithm constructs a...roved when additional data, in the form of related genome...2593 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...or Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration...2593 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo as...ns with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome...2592 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for s...parison of assemblies to alignment of large syntenic genomic regions and whole genome...2592 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence librari...sed to help decide between alternative sequencing methods for a sequence-based project, e.g. should the library be p...2592 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks....synteny blocks among multiple species by using prebuilt alignments in the UCSC genome...2592 days ago