Results for "TE"
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...ome scaffolding of pre-assembled contigs using mate-pair data. It also produces e...ffolder includes 4 subcommands: dumpconfig generates a configuration file that no...manual improvement of scaffolds scaffold constitutes the central scaffold-builder...2905 days ago
- ...single application MEGAN6 is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools you need in one...stomized taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggNOG or KEGG...
2893 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2891 days ago
- ...e STRucture In Populations) is a suite of tools for discovering and...data. The methods are designed to detect shared variation using data...hin a set of sequenced genomes to detect variation. The methods are...processing more genomes provide better results.To run discovery or...
2850 days ago
- ...assembling DNA sequence data generated on the Illumina sequencing p...s README will take you through the steps necessary for running _A5-m...the job. In order to produce accurate results, A5-miseq requires Il...ent assembler for metagenomes and heterozygous diploid or polyploid...
2869 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included...2574 days ago
VAGUE:Velvet Assembler Graphical Front End
..."Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for beginners to use, but VA...2679 days ago
- ...gram for convenient conversion of genome coordinates (or annotation files) betwee...CrossMap is designed to liftover genome coordinates between assemblies. It&rsquo...commend using CrossMap to convert genome coordinates between species....
2851 days ago
- ...rovides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of inform...
2871 days ago
- ...mbler that allows to identify SNPs, indels and alternative splicing events. It ca...tify each variant in each condition. It has been tested on Illumina datasets of u...everal possible post-treatments meant to facilitate the analysis of the results....
2871 days ago
