IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...ght of, and welcome feedback at mike.smith@embl.de. If you’re not interested in the quality assement of the raw or event level data, and want to jump straight to the get...2414 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...nt how many contigs: grep ">" reads.fa | wc -l # Download sample PacBio from the PBcR website wget -O- http://www.cbcb.umd.edu/software/PBcR/data/selfSampleData.ta...2410 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositi...2410 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and...2410 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observations o...2409 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...last suite of algorithms. Relying on unique software architecture, PLAST takes f...l computers without requiring any additional hardware devices. PLAST stands for&...gth, etc.), Does not require any additional hardware, since it is a software sol...2406 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a...2403 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main...2401 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...air of sequences. FOGSAA is a fast Global alignment algorithm. It is basically a branch and bound approach which starts branch expansion in a greedy way taking the symbols from the...2399 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolve...2399 days ago